rs27678759 SNP Detail

Summary

• ID
  rs27678759
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:179504616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGCCTAT CCCAGGGAAA
  GCCTGTAATA CAGGGGGTGA GGGTAATACA GACCATGCCC CATCATGAGA GTTAAGTGGC
  TACTGGATGA CCTGCCCTGC TGCCCAGGCA ACTAACAGAC AGACTCAGGC CCTGACTCGG
  TGTGTTGTTC TGGGTGGGAA GCAGTAAACT GTAACTGGAG AGTGGTGCAT GATGGGAGGG
  Y
  TAAGAGATCT GGCAGGGCCC CTAGACAGAC CTTCTGTGTT ACCCTGCCAG TAACTGGTCT
  CCAGGGCCCA GGCACAGAGA GTAAACGTCT ATGACAGGCC CCAGTTACAG TGAAAGTAAG
  ACCATATGGG GACACAAATG CCTACCCTCC TGACAGGCCC TCCCCTGACA GCACCTGTCC
  TCTCAAGCCT GGTCCAGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37838294	NES08687771	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T		C	T	T	C		T
ss320631163	CHEV_2_179597528	CHEVERUD	SCREENING_POP	f	SNP									C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27678759					SNP	T	T	T	T	T	C	T	T	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37838294	NES08687771	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179504616 () rs orientation: forward

Symbol	Name	Function Class
Cdh4	cadherin 4	Intron
Rr572589	regulatory region 572589	1783 bp distal
Rr572590	regulatory region 572590	642 bp proximal