rs27680331 SNP Detail

Summary

• ID
  rs27680331
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180685714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTTATTG GTGCTAAGGA
  TCAGGTGCCT GGATTACTCT TTAACTTTCT GGTAGTTTGG AACTCTCAGG GGAAAATCTC
  AGTGCCAACA GTTATAATCC ACAACTCGGG TGCCTTCAGA GTCTAAGCTT GGGGCAGATT
  AGATTCGACA CAACCCAAAG GGTAGCCCTG TTTCCTGGTT TGTGCCTTAG CACCTATGTG
  Y
  CCAAGGCTCA GGAACATTGG CCTCAACCCC CTCCCGGGAC CACAACCACA CTCAGGCCCT
  GGCAGCCAGA CCCTAAATCT CTCAATACCT GCTGATCCCC AGCCCAGTGA CACGGCTTGG
  GCTCTGCAGC TGATGCTGAG GCAGGTGGTG GGTCTCAGGC TCTTTGTGAA GAATTTTGTC
  CTGACAGGCT GACAAAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37833058	NES08679718	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27680331					SNP	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37833058	NES08679718	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180685714 () rs orientation: forward

Symbol	Name	Function Class
Chrna4	cholinergic receptor, nicotinic, alpha polypeptide 4	375 bp upstream
Gm74971	predicted gene, 74971	within coordinates
Rr572911	regulatory region 572911	955 bp distal
Rr572912	regulatory region 572912	within coordinates
Tssr28158	transcription start site region 28158	367 bp upstream
Tssr28159	transcription start site region 28159	317 bp upstream