GAATATCTGC CTTCAGGGCC CTGCCCTGTC ACTCTAAATC CCACCCCTGG ACCAAGCTTA ACCAGGGAGA GGGTTCATGG CTAGGGCTCA TGGGCAGGTG K CTACAGTGAG CACAGGGAGA GGGGACCCAA GGCCAGGTCT TGCCAAGCAG AAGCAGAGAT GTGAGGCCTT AAAGCACTCG TTCACCATCA GGATTACTA K = G/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
DBA/2J |
FVB/NJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37833070 | NES08679805 | PERLEGEN | MM_PANEL2 | f | SNP | T | G | G | T | T | G | G | T | G | T | T | G | T | ||
ss45217118 | mCV27571609 | ABI | CRAMUS_MOUSE | f | SNP | T | T | G | T | G | ||||||||||
ss148396214 | ENSMUSSNP6525488 | ENSEMBL | ENSEMBL_Sanger | f | SNP | T | G | |||||||||||||
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
DBA/2J |
FVB/NJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs27680343 | SNP | T | T | G | G | T | T | G | T | G | T | G | T | T | G | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37833070 | NES08679805 | PERLEGEN | MM_PANEL | f | SNP | G/T |
Location: Chr2:180684748 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Chrna4 | cholinergic receptor, nicotinic, alpha polypeptide 4 | Intron | ||||||
Gm74971 | predicted gene, 74971 | within coordinates | ||||||
Rr572911 | regulatory region 572911 | within coordinates | ||||||
Rr572912 | regulatory region 572912 | 492 bp proximal | ||||||
Tssr28158 | transcription start site region 28158 | 585 bp downstream | ||||||
Tssr28159 | transcription start site region 28159 | 636 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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