rs27680344 SNP Detail

Summary

• ID
  rs27680344
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:180684702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGATGGAG GGAGGGAGAG CAGAAGAATA AAGGAAGGGA
  GGAAAGGAAT ATCTGCCTTC AGGGCCCTGC CCTGTCACTC TAAATCCCAC CCCTGGACCA
  R
  GCTTAACCAG GGAGAGGGTT CATGGCTAGG GCTCATGGGC AGGTGTCTAC AGTGAGCACA
  GGGAGAGGGG ACCCAAGGCC AGGTCTTGCC AAGCAGAAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37833071	NES08679804	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	A	A	G	G	A	A	A	A	A
ss45294416	mCV27571598	ABI	CRAMUS_MOUSE	f	SNP	A	A	G						G
ss148396210	ENSMUSSNP4882801	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27680344					SNP	A	A	G	G	A	A	A	G	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37833071	NES08679804	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180684702 () rs orientation: forward

Symbol	Name	Function Class
Chrna4	cholinergic receptor, nicotinic, alpha polypeptide 4	Intron
Gm74971	predicted gene, 74971	within coordinates
Rr572911	regulatory region 572911	within coordinates
Rr572912	regulatory region 572912	538 bp proximal
Tssr28158	transcription start site region 28158	631 bp downstream
Tssr28159	transcription start site region 28159	682 bp downstream