rs27680680 SNP Detail

Summary

• ID
  rs27680680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:19282839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTCAGGT CTACGTGTAT
  GGTCATAAAT AGGTGTGCAT GAAAGCCAGA GGCTAATCAT AGGTGCCATT CTTCAGGAGC
  TGTCCATCAC ATACTGATAC TTAAGGCCCA CCACTTCAGC TAGGTTACTG TCCTGGAAGC
  TACAGAGCTC TGGTGGGATG CAGCCCCAGC GTTAGTATTA CACATACCAC CATGTCTGGC
  Y
  TTTTATGCCC AGGTCCTCAT CTTTGGGCAC CAAATGCTTT ACCAACTATC TCCTCATTCT
  ATTTTTTCAC ACTCACAGTT TTCTGTTCCC TCTACTAAAG TTTGGCACCT GTCCTTCCTT
  CCCTGTAACC TTGGTGATGT GTCAGTGCAC CCATATAGGA ACATCATCAG TTAGTCACTA
  TAAGAACATC ATCAGTTAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37879800	NES08629900	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27680680					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37879800	NES08629900	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:19282839 () rs orientation: forward

Symbol	Name	Function Class
Cngb3	cyclic nucleotide gated channel beta 3	within coordinates
Rr106676	regulatory region 106676	1113 bp distal
Tssr36572	transcription start site region 36572	1932 bp downstream
Tssr36573	transcription start site region 36573	1920 bp downstream
Tssr36574	transcription start site region 36574	1908 bp downstream