rs27680688 SNP Detail

Summary

• ID
  rs27680688
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:19280381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAGAGAC AGACAGACAG
  ACAGACACAC ACACACATAG ACCAATCCTT ATTTAAAAAA TACGTGCTTA CACATGTTTT
  AACATTCAAT ATCACAAAAT GTCAAAGAAA TCTGGGCCCT GGGTGAGGAG TTTAACAATT
  CTTGATCATG GACCTGTGAC TCTCAAAGGT TGGAGACACC AGTTAACATC CAAACAGAGA
  Y
  TAGATTACAC AAACTTTTAT GCCAGTGATA TGGAATCAAA ATCTGAATGA ACAGACAAGA
  TAAGTTTAAT AGTAAAGTCA TGTTTCATTA CTAGATATGG GCACTTTGGC AAAAAAAGAC
  TACTTGCTTT AAATTAGAAC CTTCACACAT GTTTCACTAG TTAATCATTC ACATATATCC
  CTGTGTTTAA AATTAGGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37879808	NES08629919	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27680688					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37879808	NES08629919	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:19280381 () rs orientation: forward

Symbol	Name	Function Class
Cngb3	cyclic nucleotide gated channel beta 3	469 bp upstream
Rr106676	regulatory region 106676	977 bp proximal
Tssr36572	transcription start site region 36572	481 bp upstream
Tssr36573	transcription start site region 36573	529 bp upstream
Tssr36574	transcription start site region 36574	539 bp upstream