rs27680689 SNP Detail

Summary

• ID
  rs27680689
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:19280283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATACACGC ACACACACAC
  ACACACACAC ACACACACAC ACACAAAGTG ACAGAGAGAG ACAGATACAG AGAGAGAGAG
  AGAGAGAGAG AGAGATGAAG ACAGAGACAG ACAGACAGAC AGACACACAC ACACATAGAC
  CAATCCTTAT TTAAAAAATA CGTGCTTACA CATGTTTTAA CATTCAATAT CACAAAATGT
  Y
  AAAGAAATCT GGGCCCTGGG TGAGGAGTTT AACAATTCTT GATCATGGAC CTGTGACTCT
  CAAAGGTTGG AGACACCAGT TAACATCCAA ACAGAGACTA GATTACACAA ACTTTTATGC
  CAGTGATATG GAATCAAAAT CTGAATGAAC AGACAAGATA AGTTTAATAG TAAAGTCATG
  TTTCATTACT AGATATGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37879809	NES08629918	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27680689					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37879809	NES08629918	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:19280283 () rs orientation: forward

Symbol	Name	Function Class
Cngb3	cyclic nucleotide gated channel beta 3	567 bp upstream
Rr106676	regulatory region 106676	1075 bp proximal
Tssr36572	transcription start site region 36572	579 bp upstream
Tssr36573	transcription start site region 36573	627 bp upstream
Tssr36574	transcription start site region 36574	637 bp upstream