rs27680781 SNP Detail

Summary

• ID
  rs27680781
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:19207680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCCCTTC TCCTTTTCAA
  TTATTTTTTT CAGTACTTGT CTTACCAATA AGTCTGAAGA ACTTAAGATG GGATAAGGAA
  TAAGAAGAAA AAAAAAAAAA ACCCTAAGTA GGAATGGGAA AAGGAGAAAT GATTATATAA
  TATATGACAC AGTTTCACTC TCTTAAACCA GCACAGGTAT TATCTCCTCA CAACACCAAC
  M
  CTGTCACATC TTTTTCCCAT GTTCCATACA AATTGTGTCT ATCCATATCT ATCTATATCG
  AAATGCATTA CATATAGTAA TAGACATTTA CCTATTTACC TAAAACCAAC CATAAAAGTC
  CTAAATAAAG TCTTTATTTC TTAACGAAAA ATAATGACTA TAATAATCTT TACACAGCAG
  GGAGGGATAG ACTCTAAGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37879901	NES08723956	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27680781					SNP	A	A	A	A	A	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37879901	NES08723956	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:19207680 () rs orientation: forward

Symbol	Name	Function Class
Rr376180	regulatory region 376180	516 bp upstream