rs27680782 SNP Detail

Summary

• ID
  rs27680782
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:19207543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCCCACA CACAGACACA
  AAGAGTCTCT CTCTCTCTGT CTCTGTCTCT GTCTCTCTCT CTGTCTCACA CACACACACA
  CACACACACA CACACATACA CACACACACA AACATATACA CACACATACA ATTTAAAAAA
  CCCCTTCTCC TTTTCAATTA TTTTTTTCAG TACTTGTCTT ACCAATAAGT CTGAAGAACT
  K
  AAGATGGGAT AAGGAATAAG AAGAAAAAAA AAAAAAACCC TAAGTAGGAA TGGGAAAAGG
  AGAAATGATT ATATAATATA TGACACAGTT TCACTCTCTT AAACCAGCAC AGGTATTATC
  TCCTCACAAC ACCAACACTG TCACATCTTT TTCCCATGTT CCATACAAAT TGTGTCTATC
  CATATCTATC TATATCGAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37879902	NES08630531	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27680782					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37879902	NES08630531	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:19207543 () rs orientation: forward

Symbol	Name	Function Class
Rr376180	regulatory region 376180	653 bp upstream