rs27680783 SNP Detail

Summary

• ID
  rs27680783
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:19207041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCAATTC ATTTTTAGCT
  GAGACAGAAC ATCATGGTAG CCTGGAAGTA GTGTTGCAAA GCTGTATCTT ATCCTTGGTT
  CCTTCCTTTT ATTTCTTCAA CTTTCTGGCT TCCATGTGAG TAATTCTGCC ACACTACTTC
  CAGGCTACCA TGATGCTCTG CCTCAGCTTG TGTCCAAAAG AATGGAGCCA ACTAAGAGTG
  Y
  GTTGAACTAT TAATTCAGCA TAAGTCCTTC TAGTATGAGA AGGTGGGTGC ATAAAACTGT
  TTACTACACA AGTATCAGGA ATTAAGTTTC AATCCCCACA ACCCACATAA AATAATACAT
  GTAGCACAGT GATCTGTAAT CCCTATATGG AGATGAAAGT CGGAGACAAG ACAATCTCTG
  ATTTTTCTCA GTCTATTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37879903	NES08630540	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27680783					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37879903	NES08630540	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:19207041 () rs orientation: forward

Symbol	Name	Function Class
Rr376180	regulatory region 376180	1155 bp upstream