rs27680784 SNP Detail

Summary

• ID
  rs27680784
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:19206953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGAGATG TCTGGAAAAC
  TAGCAGCACT TCTCTAGATA TATGAATATT TTCATATGCC TATAAACTAG GACTTATTTT
  GTATTAATAG TTCAATTCAT TTTTAGCTGA GACAGAACAT CATGGTAGCC TGGAAGTAGT
  GTTGCAAAGC TGTATCTTAT CCTTGGTTCC TTCCTTTTAT TTCTTCAACT TTCTGGCTTC
  Y
  ATGTGAGTAA TTCTGCCACA CTACTTCCAG GCTACCATGA TGCTCTGCCT CAGCTTGTGT
  CCAAAAGAAT GGAGCCAACT AAGAGTGTGT TGAACTATTA ATTCAGCATA AGTCCTTCTA
  GTATGAGAAG GTGGGTGCAT AAAACTGTTT ACTACACAAG TATCAGGAAT TAAGTTTCAA
  TCCCCACAAC CCACATAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37879904	NES08630539	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27680784					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37879904	NES08630539	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:19206953 () rs orientation: forward

Symbol	Name	Function Class
Rr376180	regulatory region 376180	1243 bp upstream