rs27681623 SNP Detail

Summary

• ID
  rs27681623
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180029964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGG TGAGGGACAG GGCCCTTCAG
  R
  AATAGCCTCC AGATTTCCAT GGGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37836147	NES08684566	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	G	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27681623					SNP	A	A	A	A	A	A	G	A	G	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37836147	NES08684566	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180029964 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12894	CpG island 12894	1625 bp distal
Mir1a-1	microRNA 1a-1	877 bp upstream
Mir1a-1hg	Mir1a-1 and Mir133a-2 host gene	within coordinates
Rr572733	regulatory region 572733	1705 bp distal
Rr572734	regulatory region 572734	1754 bp distal
Rr572735	regulatory region 572735	970 bp distal
Rr572736	regulatory region 572736	292 bp distal
Rr572737	regulatory region 572737	6 bp proximal
Rr572738	regulatory region 572738	127 bp proximal
Tssr22222	transcription start site region 22222	106 bp downstream
Tssr22223	transcription start site region 22223	948 bp upstream
Tssr28102	transcription start site region 28102	1408 bp upstream
Tssr28103	transcription start site region 28103	1374 bp upstream