rs27681626 SNP Detail

Summary

• ID
  rs27681626
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180029880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCCCAAGC ATTTCCCTTG AACTTTTTTT TTTTCAAATT
  AGCCTATAGT TTTTTTTTTT TGTTGTTTTT TTTTTTTCAG AAGTTGGTAC AGCAAACAGG
  M
  GGACAGCCCC TTTGTGTAGC TACAAACTAC TATTGATCAG GGACTGATGG ATCAGGAACT
  AGGTGAGGGA CAGGGCCCTT CAGAAATAGC CTCCAGATT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37836150	NES08684563	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	C	A		C	A	C	C		C	A	A	C		C
ss45296514	mCV22940580	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					C
ss320631999	CHEV_2_180122792	CHEVERUD	SCREENING_POP	f	SNP													C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27681626					SNP	A	A	A	A	A	C	A	C	C	A	C	C	C	C	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37836150	NES08684563	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180029880 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12894	CpG island 12894	1541 bp distal
Mir1a-1	microRNA 1a-1	961 bp upstream
Mir1a-1hg	Mir1a-1 and Mir133a-2 host gene	within coordinates
Rr572733	regulatory region 572733	1621 bp distal
Rr572734	regulatory region 572734	1670 bp distal
Rr572735	regulatory region 572735	886 bp distal
Rr572736	regulatory region 572736	208 bp distal
Rr572737	regulatory region 572737	90 bp proximal
Rr572738	regulatory region 572738	211 bp proximal
Tssr22222	transcription start site region 22222	22 bp downstream
Tssr22223	transcription start site region 22223	1032 bp upstream
Tssr28102	transcription start site region 28102	1324 bp upstream
Tssr28103	transcription start site region 28103	1290 bp upstream