rs27681630 SNP Detail

Summary

• ID
  rs27681630
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180029132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTC TCTCAGTATC CTAATCCTCT
  Y
  TCCACCCTGC CTAGCTACAG CTGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37836154	NES08684559	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27681630					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37836154	NES08684559	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180029132 () rs orientation: forward

Symbol	Name	Function Class
B230312C02Rik	RIKEN cDNA B230312C02 gene	1454 bp upstream
Cpgi12893	CpG island 12893	1493 bp distal
Cpgi12894	CpG island 12894	793 bp distal
Mir1a-1	microRNA 1a-1	1709 bp upstream
Mir1a-1hg	Mir1a-1 and Mir133a-2 host gene	within coordinates
Rr572731	regulatory region 572731	1725 bp distal
Rr572732	regulatory region 572732	1492 bp distal
Rr572733	regulatory region 572733	873 bp distal
Rr572734	regulatory region 572734	922 bp distal
Rr572735	regulatory region 572735	138 bp distal
Rr572736	regulatory region 572736	within coordinates
Rr572737	regulatory region 572737	838 bp proximal
Rr572738	regulatory region 572738	959 bp proximal
Tssr22221	transcription start site region 22221	1722 bp downstream
Tssr22222	transcription start site region 22222	723 bp upstream
Tssr22223	transcription start site region 22223	1780 bp upstream
Tssr28102	transcription start site region 28102	576 bp upstream
Tssr28103	transcription start site region 28103	542 bp upstream