rs27681638 SNP Detail

Summary

• ID
  rs27681638
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180028829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAT GTGGGCTCAG ACTGAATCAA
  Y
  CTCTGCTCTT CAGGTCCCCC CAACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37836162	NES08684551	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27681638					SNP	T	T	T	T	T	T	C	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37836162	NES08684551	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180028829 () rs orientation: forward

Symbol	Name	Function Class
B230312C02Rik	RIKEN cDNA B230312C02 gene	1151 bp upstream
Cpgi12893	CpG island 12893	1190 bp distal
Cpgi12894	CpG island 12894	490 bp distal
Mir1a-1hg	Mir1a-1 and Mir133a-2 host gene	within coordinates
Rr572731	regulatory region 572731	1422 bp distal
Rr572732	regulatory region 572732	1189 bp distal
Rr572733	regulatory region 572733	570 bp distal
Rr572734	regulatory region 572734	619 bp distal
Rr572735	regulatory region 572735	within coordinates
Rr572736	regulatory region 572736	296 bp proximal
Rr572737	regulatory region 572737	1141 bp proximal
Rr572738	regulatory region 572738	1262 bp proximal
Tssr22221	transcription start site region 22221	1419 bp downstream
Tssr22222	transcription start site region 22222	1026 bp upstream
Tssr28102	transcription start site region 28102	273 bp upstream
Tssr28103	transcription start site region 28103	239 bp upstream