rs27681642 SNP Detail

Summary

• ID
  rs27681642
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180026563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTTGCTC CTGTGAGGAC
  AGATTAGCCA GTACAGAGAG GACACTTCTC TGAGTACAGG AGGAAGGAGG TTTTCTAGTG
  GATTCTAAAA CAGCAGCAAG TCTTTGGATG CCCATGCACT GCACAGGGAC ACTCATGCCT
  TCTGAGGAGC TTGAAGCTTC CACCCATAGT CCCAGAGTCG TCTCAATGGC CTGTACTTGA
  Y
  AGTAGCAGGG TGGTAGAGAC TCGCTCAATG TCACTTTGCT CAAAGGGGAT AGTTGGCCAA
  TCCCAGGCTG CTGGACTCAG GAATCCCAGC CCAGTGGGGC CATGTTCCCA AGCCGTGTTT
  CTTATACAAC CCAGGTGGGA ACAAAATGGA GCCATCGCCA AGTGTACTTG TGGATATGGG
  GGTCTCCAAG CCACACACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37836166	NES08684630	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27681642					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37836166	NES08684630	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180026563 () rs orientation: forward

Symbol	Name	Function Class
B230312C02Rik	RIKEN cDNA B230312C02 gene	within coordinates
Cpgi12893	CpG island 12893	756 bp proximal
Cpgi12894	CpG island 12894	1245 bp proximal
Mir1a-1hg	Mir1a-1 and Mir133a-2 host gene	834 bp upstream
Rr572731	regulatory region 572731	344 bp proximal
Rr572732	regulatory region 572732	845 bp proximal
Rr572733	regulatory region 572733	1078 bp proximal
Rr572734	regulatory region 572734	1626 bp proximal
Rr572735	regulatory region 572735	1982 bp proximal
Tssr22221	transcription start site region 22221	829 bp upstream
Tssr28102	transcription start site region 28102	1983 bp downstream