rs27681648 SNP Detail

Summary

• ID
  rs27681648
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180025799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGATCTCA CTGTTGAAGG
  AGCTGCTTGC ATTTTGCAGT GGCATCATTG GCATGGACTG CTCAGGGTGG GAGTGAAGAT
  AAACAGTTGG ATGGGAGAAG TGTCTCCTCT GTCCTGTTTC CTGGGGGAAG AAATAAGAGG
  CACACACCAC TCTTGAGAGC TTTGTGTTTG TGGGTACAAG GACAAGCTGG CTTTAAGGAA
  K
  TCACTTGCTA AGCCCCAATG CCAGTGGGCT TGTGGGGAGA ACTATTGGTT AGAACCCATG
  ACAAGGGTGC TCTAACTCCT GCTCCTGGGT GGAGGACAGG ACTGGCTTGT CCAGGCTTTG
  TGGCTGGCCC CTGCTGAGGT ATAAAATGCA TGAAACTCCT GTCCCTGAGA ACTCACTGGG
  TGGAGCAGAG GATCTTGGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37836172	NES08684637	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27681648					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37836172	NES08684637	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180025799 () rs orientation: forward

Symbol	Name	Function Class
B230312C02Rik	RIKEN cDNA B230312C02 gene	within coordinates
Cpgi12893	CpG island 12893	1520 bp proximal
Mir1a-1hg	Mir1a-1 and Mir133a-2 host gene	1598 bp upstream
Rr572731	regulatory region 572731	1108 bp proximal
Rr572732	regulatory region 572732	1609 bp proximal
Rr572733	regulatory region 572733	1842 bp proximal
Tssr22221	transcription start site region 22221	1593 bp upstream