rs27682590 SNP Detail

Summary

• ID
  rs27682590
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:3689182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAACCACT TACATAATTA
  GGTGTAGTGT ATTGAGCACC CACTGCAACT ATTACCTGTG AGATTCTTTT CATCTTCAAC
  TGTAATAGAG TTTGGAGTGT CACTCGGATG ATGCTGGGGC TGACCCTTCC TAGCTGTATG
  TTGCTGGAAA TTTACTGGCC ATGCTAGCCT CTGGGAGCTT ACGTTAAACC TCAGAGATTG
  S
  TGGTAAGGGA TCCAGGTTCA GTGCAGGGTA ATTCAGAATA ACCAAGGAGC AAAGGGCATT
  GTGCTATACA TATAGCAGGC TATTCTGCCT AAAAGGGAAA GAAATGCTGG TCCTTGATAT
  AACATAAACG AACCCTGAGG ATGTTTTCAT AGTGAAACAG GCCAGTTACC AAAGAAAAAG
  TACTGTGCAA TTGCTCTTAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37875611	NES08667689	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27682590					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37875611	NES08667689	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3689182 () rs orientation: forward

Symbol	Name	Function Class
Lyn	LYN proto-oncogene, Src family tyrosine kinase	within coordinates
Rr104512	regulatory region 104512	655 bp proximal
Tssr36344	transcription start site region 36344	1254 bp downstream