rs27682594 SNP Detail

Summary

• ID
  rs27682594
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:3688692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCAGGGT GGCCTTAAAC
  TCAAAGAAAT CCATCTGTCC TGTCTCTGCC TCCTGAATTC TGGGGATTAA AAGCATGTCC
  CACCACTGGC TGTAAGAAGA TATTTATGAT GTGGAAGAAA GAGGCAGCTA GCACTTCCAT
  AGATTTAGAG AGGTGGGTAA GTAACTGAAA GACTCAAAGG GTGTTCCACA GAGGTTAATT
  Y
  GAAGCTAGAA AATATCTGTT GCTGCTTGTT TTGAGAGCTA TAGACTTTAC CTGGGATCTG
  CAAGTTGATA TATGATAGCC ACTCTAACTA TTCCAAGTAA TGTTGGCCTT GCTCAAAAGT
  TTGTCTACAT GCCATTTGAA TAAGAGATCT AGATTTTGGG GCAGTCACCA ATCTTTGCCA
  TTCAGTTTAA AGGAGAGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37875615	NES08667685	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27682594					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37875615	NES08667685	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3688692 () rs orientation: forward

Symbol	Name	Function Class
Lyn	LYN proto-oncogene, Src family tyrosine kinase	within coordinates
Rr104512	regulatory region 104512	1145 bp proximal
Tssr36344	transcription start site region 36344	764 bp downstream