rs27682604 SNP Detail

Summary

• ID
  rs27682604
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:3686406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAATAAACA CAATTTCTAA CAAATAGCAG TACAAGGAAC
  CTCAGACACA GTGACTACAA AAGGTAGGGA GATCAGGGAA CTAGAGTGGC CTGCAGGCTG
  Y
  CCTTAAGGAT GGCGCTGTTG TCCTTATTAT CTATGGATAA TTGGTTCCAG GACTGTTGTG
  TTTATAAAAA GATAAAGAGA AAAGGAATAT GTTCTATAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37875625	NES08667819	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T		C	T	C	C	C	C	T	C	C
ss45664226	mCV23809708	ABI	CRAMUS_MOUSE	f	SNP		T	T				C		T
ss145942408	ENSMUSSNP6825710	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27682604					SNP	T	T	T	C	T	T	C	C	T	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37875625	NES08667819	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3686406 () rs orientation: forward

Symbol	Name	Function Class
Lyn	LYN proto-oncogene, Src family tyrosine kinase	within coordinates
Tssr36341	transcription start site region 36341	1560 bp downstream
Tssr36342	transcription start site region 36342	1541 bp downstream
Tssr36343	transcription start site region 36343	1504 bp downstream
Tssr36344	transcription start site region 36344	1504 bp upstream