rs27682605 SNP Detail

Summary

• ID
  rs27682605
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:3686170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCCTTCA TCCCTCCCAG
  AAAAAGGAGG AGAGGAAACA GAAAAAAACC CTGGTGCAGA GCTCCAGTTT CTGCTTAGAA
  GATGGATGTG AAATGCCCAG GATGCTGCTA AAGCCCACAC ACAAAGGGTA GCCTGCTGTG
  TTGTCTGCTC CACTGCCTTG TCAGCCTATA AGTAGAAAAA CAAGGCTGAC AAAGGATATT
  Y
  TTTCATGACA AAAAAGGAGT AAAAATACCC CAAATCAGGA TAATGGGAAA CCCTTTCAAT
  AAATGCATTT TGGGTTAATA ATATATTATC TTGAAAGTGT CTCTCTAAGT TGCCCAGGCT
  GGCCTTAAAT TGAACAGAAT AAACACAATT TCTAACAAAT AGCAGTACAA GGAACCTCAG
  ACACAGTGAC TACAAAAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37875626	NES08667818	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27682605					SNP	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37875626	NES08667818	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:3686170 () rs orientation: forward

Symbol	Name	Function Class
Lyn	LYN proto-oncogene, Src family tyrosine kinase	within coordinates
Tssr36341	transcription start site region 36341	1324 bp downstream
Tssr36342	transcription start site region 36342	1305 bp downstream
Tssr36343	transcription start site region 36343	1268 bp downstream
Tssr36344	transcription start site region 36344	1740 bp upstream