rs27682994 SNP Detail

Summary

• ID
  rs27682994
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180500106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCAGCCAA TCAGGAACTG CTGTTTAGAA GAGATGCTTT
  CGTAGGACCA ATGGGTCGAG GATGGAGGGT ATTAAAGGCG CTTGCAGCAG TGCTCAGAGG
  R
  CTTGCTGTGG CATTTCTCAC CTGCTCCTGG AGTCTGTGTC ATTGACTCTG TACTACCTTA
  CCTCCAACCC CCAAGGGCAC TTAGAGTCAG GTGGCGAGTA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37834024	NES08724759	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27682994					SNP	A	G	G	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37834024	NES08724759	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180500106 () rs orientation: forward

Symbol	Name	Function Class
Gm14342	predicted gene 14342	within coordinates
Rr572864	regulatory region 572864	707 bp distal