rs27683004 SNP Detail

Summary

• ID
  rs27683004
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180498633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACACACC CATGCTTACA
  TGTGCATTTA CATGTACTCA TGCTCACACG TGCACTCAGG CACCTTCACA TCTTCATATG
  TGTGGACTCA GACACCCGCA CGTAAGCTCA CATGTATGCA TTTAGACACC TTCACATAAC
  TCCATAGAAA CCTACTGATT TCTACTCCAA GGACACTGAT GAGGGACACA TCGCCAGAAC
  Y
  GTGCATGCTC AGGAGTGAGA GCCTAACTGG GGTGAGAATT GACCTTAGCA CACACCAGTA
  GGCAGGATCT CTGTGGCCAG TACAACCATG CTGGCTACTA ACACACAAGC CTTCCAGCCT
  TTTCTGAGCC CAACTGGTCT TAACTATGGA TAAGCCACCA CCCAGACAGC TTAGGGCTGC
  TTGTGCTACA ACATATAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37834034	NES08685990	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27683004					SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37834034	NES08685990	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180498633 () rs orientation: forward

Symbol	Name	Function Class
Gm14342	predicted gene 14342	within coordinates
Gm14344	predicted gene 14344	1579 bp downstream
Rr572863	regulatory region 572863	1234 bp distal
Rr572864	regulatory region 572864	294 bp proximal