rs27684275 SNP Detail

Summary

• ID
  rs27684275
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178252228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTCAGCC TAGGTCCATT
  GCATCTCAGT GAGTAAGGCT TTGGGGCTCT TTTGCCCCTT GTGGGTGAAG ATGGGAGTGG
  GGAAGTGGCT CCTTTATCGC CGTACAATGG TCCTCTCCAC ACACCACGTG TGCCGTGTGC
  CATTTGTTGA AATTAGGGAT GAGACTGTTG GAGGGTGTGC TGCTCTGCTC GCACTGGAGT
  W
  GAGAGACAAA GAAAGGTTGA GTGGGAGGGG CCGGCTGTTC TCTGAAGCGC CTCAGTCACA
  GGCCCCTTCA CTGGGGAGAA GCTCTGATCT CTCCATATTC CTGGCTCCTC TTTCTGATTT
  CTCCTAGAAC TTCAAACTCA AGATTTCTTC ATTCTCCAAT TGCAGAGTGG CAGGTCAGGG
  TGCAGGAACA GGAAGGAACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37847105	NES08693578	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27684275					SNP	T	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37847105	NES08693578	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178252228 () rs orientation: forward

Symbol	Name	Function Class
Gm74757	predicted gene, 74757	346 bp upstream
Rr572435	regulatory region 572435	within coordinates