rs27684276 SNP Detail

Summary

• ID
  rs27684276
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178252217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGGACAA GGGGTTCAGC
  CTAGGTCCAT TGCATCTCAG TGAGTAAGGC TTTGGGGCTC TTTTGCCCCT TGTGGGTGAA
  GATGGGAGTG GGGAAGTGGC TCCTTTATCG CCGTACAATG GTCCTCTCCA CACACCACGT
  GTGCCGTGTG CCATTTGTTG AAATTAGGGA TGAGACTGTT GGAGGGTGTG CTGCTCTGCT
  Y
  GCACTGGAGT TGAGAGACAA AGAAAGGTTG AGTGGGAGGG GCCGGCTGTT CTCTGAAGCG
  CCTCAGTCAC AGGCCCCTTC ACTGGGGAGA AGCTCTGATC TCTCCATATT CCTGGCTCCT
  CTTTCTGATT TCTCCTAGAA CTTCAAACTC AAGATTTCTT CATTCTCCAA TTGCAGAGTG
  GCAGGTCAGG GTGCAGGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	PWD/PhJ	WSB/EiJ
ss37847106	NES08693577	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	PWD/PhJ	WSB/EiJ
rs27684276					SNP	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37847106	NES08693577	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178252217 () rs orientation: forward

Symbol	Name	Function Class
Gm74757	predicted gene, 74757	357 bp upstream
Rr572435	regulatory region 572435	within coordinates