rs27684280 SNP Detail

Summary

• ID
  rs27684280
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178251050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACGGAGGCT CAGAGCAAGT
  ATAGGTTAGA AGCAAACTGC CTTGACTCAG GGGGTGTGGA TGTGATCCCA CCTCCTCTTC
  TCTGCAGGTC ACCTGCCTCC TCCAGATCCC CTTCCTCAGG TGAAGAAAAC AGGAAGCAGC
  CACTTCACAG TGTCCTGAAG ACCCCGTGGG AACCCATCTG GAGCTGCGGG TACCACTGAG
  R
  TGTGATGCTA GGTCACCAGG AGACTGCTTC AGGTGTGAGC AGTCGCAACT TGTCTGACAG
  GTATAATTTT TTAGTGAATT GAAGAGTCAG GCTAGGGTAT TTGTTGTTAT TATTATTATT
  ATTGCTATTA TTATTTTATT TATTATTATT GCTATTATTA TTATTATTAT TATTATCACT
  ATTAAGTGGA ATGGGCTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	NZW/LacJ	WSB/EiJ
ss37847110	NES08693597	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	NZW/LacJ	WSB/EiJ
rs27684280					SNP	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37847110	NES08693597	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178251050 () rs orientation: forward

Symbol	Name	Function Class
Gm74757	predicted gene, 74757	1524 bp upstream
Rr572434	regulatory region 572434	1760 bp distal
Rr572435	regulatory region 572435	1139 bp proximal