rs27684282 SNP Detail

Summary

• ID
  rs27684282
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178250696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGTCCC TGGGGCTCCC
  TCTCCAGCCA GGGTGAGGAG CCACTTGTCT CTAAAGGAGG CTATCTGATG GTGACACCTG
  AGGTTGAGAT TTTTCCTCAC ATGTGCACCA AACAACACCC ACAACACGCA TGTCTCACCC
  ACACCCACAC CCACACATGC ATACAGAAAA CAAATAAGTG GAGGTTTGAT TCTGCCCTTC
  Y
  ACCAGTGATT CTCCAGTCAG AAGGTGGATT TCTTGCAGTT CAGAGGACAC TTGACTTTAT
  GATCTCCCCT GGCTGCTAGG AAGCACTTCA CATGGGCTTA GGGAATAAGG AGCACTCACT
  CTAAATGGGA ACCCCTGGAA TTAATCTGTG TTGGACGGAG GCTCAGAGCA AGTATAGGTT
  AGAAGCAAAC TGCCTTGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37847112	NES08693592	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27684282					SNP	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37847112	NES08693592	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178250696 () rs orientation: forward

Symbol	Name	Function Class
Gm74757	predicted gene, 74757	1878 bp upstream
Rr572434	regulatory region 572434	1406 bp distal
Rr572435	regulatory region 572435	1493 bp proximal