rs27684283 SNP Detail

Summary

• ID
  rs27684283
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178250300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTGGCAT GGGGAGACCA
  GTGAGGCTCA CTGCAGGCAA GTGGTCAGCT TGTCTGTTTT CCTTCTCATT TGCTGGGGAA
  TTTGTGTGTT TACAGTGTAT ACACAGAAGC ACATGGAAGA TTGCTCACAA GGGGGCAAGA
  GTTCAAAGGA AACAGATCAA AAATAAAACA ACGGAAAAAA AACCCACCTT TGATGACAAG
  W
  CTTCTCACCT CCAAGCTCCG AGGACACGAA CAAGTATGAC ACAAAAGCAT GAGGCCAGAG
  AACCTTCTTG AAGGTCAAAT TCAGAAAACC GGCCTGGAGG GAACCGATCC ATAGTGCTCT
  CTTTGCTATC TGTTCCCAGA ACCCATGAAA ATGCCAGCTG TGGAGGCTTG TGATCCCAGC
  AATGAGGTGG GGAGAAGAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss37847113	NES08693640	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs27684283					SNP	A	A	A	A	A	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37847113	NES08693640	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178250300 () rs orientation: forward

Symbol	Name	Function Class
Rr572434	regulatory region 572434	1010 bp distal
Rr572435	regulatory region 572435	1889 bp proximal