rs27685342 SNP Detail

Summary

• ID
  rs27685342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178010202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTTATG CACATTGTTG
  TTTTGCTTGC ATGTATGTCT GTGTGAGGAT ATAGGATCCC CTGGAACAGG GGTTACAGAC
  AGTTGTGAGC TGCCATATGG TTGCTGGGAC TTGAAACCAG GTCCTATGGA AGAGCAGCTA
  GTGCTATTAA ACTCTGAGCC ATCTCTCTAG CCCCACCCCA ATTCCATTTT CTAACTATTA
  Y
  TTTAGTGCTT ACAATCAAAT ATTGAGTCTG ACTGTAAAAA TTGGTGAAAT TAAGCAGCAC
  CTACCTTATT GAACTGCAGA TCAGGTTTTT TTGAAAATCC ACTACAAAAA AGATAGTGAC
  AATATTTAAG GAATGACTCA GTTATCAGTA AAATGTTTTT CGTAAACACT ATTATAAATA
  CTAAGACATA TGTGGATTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37848265	NES08699574	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27685342					SNP	C	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37848265	NES08699574	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178010202 () rs orientation: forward

Symbol	Name	Function Class
Sycp2	synaptonemal complex protein 2	within coordinates
Tssr28056	transcription start site region 28056	963 bp downstream