rs27685343 SNP Detail

Summary

• ID
  rs27685343
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178009968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTATCTAGG TAGTCCCTAA
  ACTTGTAATC CTTCTGCCTT AGCTTTCCAA GTAACTGGAA TTATCAGAGT ATACCACATG
  GTCCAATTTA AAAAGAATGT TTTCTTTAGA AAACAGAAAG TTAAGGAACT ATTTTAAGTA
  ACTTGTGATG AAATTTGTCA ATTGTTATAA ATCCATTTAG CAATACTCTA TAACTTTAAA
  W
  CTAATTCCCT TTTCTTTTTT TTAATATTCA TTCTTATTTT ATGCACATTG TTGTTTTGCT
  TGCATGTATG TCTGTGTGAG GATATAGGAT CCCCTGGAAC AGGGGTTACA GACAGTTGTG
  AGCTGCCATA TGGTTGCTGG GACTTGAAAC CAGGTCCTAT GGAAGAGCAG CTAGTGCTAT
  TAAACTCTGA GCCATCTCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37848266	NES08699609	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27685343					SNP	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37848266	NES08699609	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178009968 () rs orientation: forward

Symbol	Name	Function Class
Sycp2	synaptonemal complex protein 2	within coordinates
Tssr28056	transcription start site region 28056	1197 bp downstream