rs27688357 SNP Detail

Summary

• ID
  rs27688357
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:19877407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTCTGT GCCCTTCTTT
  AAAATTCTTT TGTAAGTGTG TGTAGTGGTG GGGTGCATAA GTAAAGATTA AAGGATTAAA
  GATGATCTTG TAGTTTTGCA GTTCCCTCCT TCCATATGTG AGATTCCAGG AATCGAACTC
  ATGGAGTTGA CTTCAAGCTC TTACCTGCTG AGTCATCATG TTGACTGCAC AGATTTAATT
  Y
  GTGAAGCAGA GCAAGCATAG ACTATATTTA AGAAAAATTT CCTATTTAAA GAAAAGATTG
  GAGACACATT TTGCTATTTT TCTTTTTCTG AGCAACCTCT GCATTGTTTC AACTTTATGT
  AGCAACCATG CTGTATCTAC ATCTTCTGAA GGAATAAAGT ACAATTAGTT GGATTTTCTG
  GAATAAAGTA TGACAGAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37877981	NES08629697	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27688357					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37877981	NES08629697	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:19877407 () rs orientation: forward

Symbol	Name	Function Class
Atp6v0d2	ATPase, H+ transporting, lysosomal V0 subunit D2	within coordinates
Gm68467	predicted gene, 68467	within coordinates
Tssr41030	transcription start site region 41030	265 bp upstream
Tssr41031	transcription start site region 41031	203 bp upstream
Tssr41032	transcription start site region 41032	186 bp upstream
Tssr41033	transcription start site region 41033	120 bp upstream
Tssr41034	transcription start site region 41034	88 bp upstream
Tssr41035	transcription start site region 41035	62 bp upstream
Tssr41036	transcription start site region 41036	12 bp upstream
Tssr41037	transcription start site region 41037	68 bp downstream
Tssr41038	transcription start site region 41038	134 bp downstream
Tssr41039	transcription start site region 41039	146 bp downstream
Tssr41040	transcription start site region 41040	188 bp downstream
Tssr41041	transcription start site region 41041	215 bp downstream
Tssr41042	transcription start site region 41042	222 bp downstream
Tssr41043	transcription start site region 41043	251 bp downstream
Tssr41044	transcription start site region 41044	339 bp downstream
Tssr41045	transcription start site region 41045	364 bp downstream
Tssr41046	transcription start site region 41046	400 bp downstream
Tssr41047	transcription start site region 41047	468 bp downstream
Tssr41048	transcription start site region 41048	487 bp downstream
Tssr41049	transcription start site region 41049	609 bp downstream
Tssr41050	transcription start site region 41050	748 bp downstream
Tssr41051	transcription start site region 41051	893 bp downstream