rs27688358 SNP Detail

Summary

• ID
  rs27688358
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:19877318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTACATAAA AATGTTGTGC
  TCCTTAGTTT ATGCATACTA TTCTACATAG CATGTGTATA TAGAGAGTGT ATAGTAAAAT
  TAGTTCACAT TATTTCTGTG CCCTTCTTTA AAATTCTTTT GTAAGTGTGT GTAGTGGTGG
  GGTGCATAAG TAAAGATTAA AGGATTAAAG ATGATCTTGT AGTTTTGCAG TTCCCTCCTT
  Y
  CATATGTGAG ATTCCAGGAA TCGAACTCAT GGAGTTGACT TCAAGCTCTT ACCTGCTGAG
  TCATCATGTT GACTGCACAG ATTTAATTTG TGAAGCAGAG CAAGCATAGA CTATATTTAA
  GAAAAATTTC CTATTTAAAG AAAAGATTGG AGACACATTT TGCTATTTTT CTTTTTCTGA
  GCAACCTCTG CATTGTTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37877982	NES08629696	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27688358					SNP	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37877982	NES08629696	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:19877318 () rs orientation: forward

Symbol	Name	Function Class
Atp6v0d2	ATPase, H+ transporting, lysosomal V0 subunit D2	within coordinates
Gm68467	predicted gene, 68467	within coordinates
Tssr41030	transcription start site region 41030	176 bp upstream
Tssr41031	transcription start site region 41031	114 bp upstream
Tssr41032	transcription start site region 41032	97 bp upstream
Tssr41033	transcription start site region 41033	31 bp upstream
Tssr41034	transcription start site region 41034	within coordinates
Tssr41035	transcription start site region 41035	8 bp downstream
Tssr41036	transcription start site region 41036	35 bp downstream
Tssr41037	transcription start site region 41037	157 bp downstream
Tssr41038	transcription start site region 41038	223 bp downstream
Tssr41039	transcription start site region 41039	235 bp downstream
Tssr41040	transcription start site region 41040	277 bp downstream
Tssr41041	transcription start site region 41041	304 bp downstream
Tssr41042	transcription start site region 41042	311 bp downstream
Tssr41043	transcription start site region 41043	340 bp downstream
Tssr41044	transcription start site region 41044	428 bp downstream
Tssr41045	transcription start site region 41045	453 bp downstream
Tssr41046	transcription start site region 41046	489 bp downstream
Tssr41047	transcription start site region 41047	557 bp downstream
Tssr41048	transcription start site region 41048	576 bp downstream
Tssr41049	transcription start site region 41049	698 bp downstream
Tssr41050	transcription start site region 41050	837 bp downstream
Tssr41051	transcription start site region 41051	982 bp downstream