rs27688359 SNP Detail

Summary

• ID
  rs27688359
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:19877165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTTTGAG AGGACAGTCT
  AAGGTGGTTG AGAAGGTGTG TTGGTCTGGG CAGGAGGCAG CTGGGTAAAT TGCATCTGCA
  GTCAAGGAGT AGGCACTTGG CTTTCTTCTT AGTTCAACAA AACATTATTT TTGTTATATT
  TATAAATGAT TATTCTACAT AAAAATGTTG TGCTCCTTAG TTTATGCATA CTATTCTACA
  Y
  AGCATGTGTA TATAGAGAGT GTATAGTAAA ATTAGTTCAC ATTATTTCTG TGCCCTTCTT
  TAAAATTCTT TTGTAAGTGT GTGTAGTGGT GGGGTGCATA AGTAAAGATT AAAGGATTAA
  AGATGATCTT GTAGTTTTGC AGTTCCCTCC TTCCATATGT GAGATTCCAG GAATCGAACT
  CATGGAGTTG ACTTCAAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37877983	NES08629695	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27688359					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37877983	NES08629695	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:19877165 () rs orientation: forward

Symbol	Name	Function Class
Atp6v0d2	ATPase, H+ transporting, lysosomal V0 subunit D2	within coordinates
Gm68467	predicted gene, 68467	within coordinates
Tssr41030	transcription start site region 41030	23 bp upstream
Tssr41031	transcription start site region 41031	29 bp downstream
Tssr41032	transcription start site region 41032	46 bp downstream
Tssr41033	transcription start site region 41033	85 bp downstream
Tssr41034	transcription start site region 41034	126 bp downstream
Tssr41035	transcription start site region 41035	161 bp downstream
Tssr41036	transcription start site region 41036	188 bp downstream
Tssr41037	transcription start site region 41037	310 bp downstream
Tssr41038	transcription start site region 41038	376 bp downstream
Tssr41039	transcription start site region 41039	388 bp downstream
Tssr41040	transcription start site region 41040	430 bp downstream
Tssr41041	transcription start site region 41041	457 bp downstream
Tssr41042	transcription start site region 41042	464 bp downstream
Tssr41043	transcription start site region 41043	493 bp downstream
Tssr41044	transcription start site region 41044	581 bp downstream
Tssr41045	transcription start site region 41045	606 bp downstream
Tssr41046	transcription start site region 41046	642 bp downstream
Tssr41047	transcription start site region 41047	710 bp downstream
Tssr41048	transcription start site region 41048	729 bp downstream
Tssr41049	transcription start site region 41049	851 bp downstream
Tssr41050	transcription start site region 41050	990 bp downstream
Tssr41051	transcription start site region 41051	1135 bp downstream