rs27688361 SNP Detail

Summary

• ID
  rs27688361
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:19876845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATATCCCA TGAATGGCTT
  GTAGCTGAGT ACTTACTAGA GTGCTTCAGA AACCTCAGGA AATTGCCTTC CACTGTCTGG
  ATTTCTCTGA GCTGTCTGCT TTTCCAAACT CATATCACAA TGGCCAATTA ATCATTTGCT
  TTTAAACCCA TACTTCCAAA TCTTCCATAT TTCTCACAGA AAACAACTCT AAAGGCAATC
  M
  CAAAATCAAG TTTATTGTAG CAATGGCAGT ATCAGTTTTC TGTATTAGTT ACTTTGTTGT
  GTTGCTGCCA CAAAATACCT GAAACAACAG TTTAGAAAGG GAAGGGTTTC TTTTGGGTCA
  GGGTTTGAGA GGACAGTCTA AGGTGGTTGA GAAGGTGTGT TGGTCTGGGC AGGAGGCAGC
  TGGGTAAATT GCATCTGCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37877985	NES08629693	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27688361					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37877985	NES08629693	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:19876845 () rs orientation: forward

Symbol	Name	Function Class
Atp6v0d2	ATPase, H+ transporting, lysosomal V0 subunit D2	within coordinates
Gm68467	predicted gene, 68467	within coordinates
Tssr41030	transcription start site region 41030	284 bp downstream
Tssr41031	transcription start site region 41031	349 bp downstream
Tssr41032	transcription start site region 41032	366 bp downstream
Tssr41033	transcription start site region 41033	405 bp downstream
Tssr41034	transcription start site region 41034	446 bp downstream
Tssr41035	transcription start site region 41035	481 bp downstream
Tssr41036	transcription start site region 41036	508 bp downstream
Tssr41037	transcription start site region 41037	630 bp downstream
Tssr41038	transcription start site region 41038	696 bp downstream
Tssr41039	transcription start site region 41039	708 bp downstream
Tssr41040	transcription start site region 41040	750 bp downstream
Tssr41041	transcription start site region 41041	777 bp downstream
Tssr41042	transcription start site region 41042	784 bp downstream
Tssr41043	transcription start site region 41043	813 bp downstream
Tssr41044	transcription start site region 41044	901 bp downstream
Tssr41045	transcription start site region 41045	926 bp downstream
Tssr41046	transcription start site region 41046	962 bp downstream
Tssr41047	transcription start site region 41047	1030 bp downstream
Tssr41048	transcription start site region 41048	1049 bp downstream
Tssr41049	transcription start site region 41049	1171 bp downstream
Tssr41050	transcription start site region 41050	1310 bp downstream
Tssr41051	transcription start site region 41051	1455 bp downstream