rs27688362 SNP Detail

Summary

• ID
  rs27688362
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:19876798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCAAGTTT CCATGTCATA
  GGCAGAATAC AGCCAGCTTC TTTGCCAGAA TATCCCATGA ATGGCTTGTA GCTGAGTACT
  TACTAGAGTG CTTCAGAAAC CTCAGGAAAT TGCCTTCCAC TGTCTGGATT TCTCTGAGCT
  GTCTGCTTTT CCAAACTCAT ATCACAATGG CCAATTAATC ATTTGCTTTT AAACCCATAC
  Y
  TCCAAATCTT CCATATTTCT CACAGAAAAC AACTCTAAAG GCAATCCCAA AATCAAGTTT
  ATTGTAGCAA TGGCAGTATC AGTTTTCTGT ATTAGTTACT TTGTTGTGTT GCTGCCACAA
  AATACCTGAA ACAACAGTTT AGAAAGGGAA GGGTTTCTTT TGGGTCAGGG TTTGAGAGGA
  CAGTCTAAGG TGGTTGAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37877986	NES08629692	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27688362					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37877986	NES08629692	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:19876798 () rs orientation: forward

Symbol	Name	Function Class
Atp6v0d2	ATPase, H+ transporting, lysosomal V0 subunit D2	40 bp downstream
Gm68467	predicted gene, 68467	within coordinates
Tssr41030	transcription start site region 41030	331 bp downstream
Tssr41031	transcription start site region 41031	396 bp downstream
Tssr41032	transcription start site region 41032	413 bp downstream
Tssr41033	transcription start site region 41033	452 bp downstream
Tssr41034	transcription start site region 41034	493 bp downstream
Tssr41035	transcription start site region 41035	528 bp downstream
Tssr41036	transcription start site region 41036	555 bp downstream
Tssr41037	transcription start site region 41037	677 bp downstream
Tssr41038	transcription start site region 41038	743 bp downstream
Tssr41039	transcription start site region 41039	755 bp downstream
Tssr41040	transcription start site region 41040	797 bp downstream
Tssr41041	transcription start site region 41041	824 bp downstream
Tssr41042	transcription start site region 41042	831 bp downstream
Tssr41043	transcription start site region 41043	860 bp downstream
Tssr41044	transcription start site region 41044	948 bp downstream
Tssr41045	transcription start site region 41045	973 bp downstream
Tssr41046	transcription start site region 41046	1009 bp downstream
Tssr41047	transcription start site region 41047	1077 bp downstream
Tssr41048	transcription start site region 41048	1096 bp downstream
Tssr41049	transcription start site region 41049	1218 bp downstream
Tssr41050	transcription start site region 41050	1357 bp downstream
Tssr41051	transcription start site region 41051	1502 bp downstream