rs27688363 SNP Detail

Summary

• ID
  rs27688363
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:19876770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTCAATT TCCTTTGAAT
  TCAGCTTCTG TCAAGTTTCC ATGTCATAGG CAGAATACAG CCAGCTTCTT TGCCAGAATA
  TCCCATGAAT GGCTTGTAGC TGAGTACTTA CTAGAGTGCT TCAGAAACCT CAGGAAATTG
  CCTTCCACTG TCTGGATTTC TCTGAGCTGT CTGCTTTTCC AAACTCATAT CACAATGGCC
  W
  ATTAATCATT TGCTTTTAAA CCCATACTTC CAAATCTTCC ATATTTCTCA CAGAAAACAA
  CTCTAAAGGC AATCCCAAAA TCAAGTTTAT TGTAGCAATG GCAGTATCAG TTTTCTGTAT
  TAGTTACTTT GTTGTGTTGC TGCCACAAAA TACCTGAAAC AACAGTTTAG AAAGGGAAGG
  GTTTCTTTTG GGTCAGGGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37877987	NES08629691	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27688363					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37877987	NES08629691	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:19876770 () rs orientation: forward

Symbol	Name	Function Class
Atp6v0d2	ATPase, H+ transporting, lysosomal V0 subunit D2	68 bp downstream
Gm68467	predicted gene, 68467	within coordinates
Tssr41030	transcription start site region 41030	359 bp downstream
Tssr41031	transcription start site region 41031	424 bp downstream
Tssr41032	transcription start site region 41032	441 bp downstream
Tssr41033	transcription start site region 41033	480 bp downstream
Tssr41034	transcription start site region 41034	521 bp downstream
Tssr41035	transcription start site region 41035	556 bp downstream
Tssr41036	transcription start site region 41036	583 bp downstream
Tssr41037	transcription start site region 41037	705 bp downstream
Tssr41038	transcription start site region 41038	771 bp downstream
Tssr41039	transcription start site region 41039	783 bp downstream
Tssr41040	transcription start site region 41040	825 bp downstream
Tssr41041	transcription start site region 41041	852 bp downstream
Tssr41042	transcription start site region 41042	859 bp downstream
Tssr41043	transcription start site region 41043	888 bp downstream
Tssr41044	transcription start site region 41044	976 bp downstream
Tssr41045	transcription start site region 41045	1001 bp downstream
Tssr41046	transcription start site region 41046	1037 bp downstream
Tssr41047	transcription start site region 41047	1105 bp downstream
Tssr41048	transcription start site region 41048	1124 bp downstream
Tssr41049	transcription start site region 41049	1246 bp downstream
Tssr41050	transcription start site region 41050	1385 bp downstream
Tssr41051	transcription start site region 41051	1530 bp downstream