rs27688366 SNP Detail

Summary

• ID
  rs27688366
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:19876562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTTCTAG CAAATATATC
  TGCTTTGTCC ACACCTACCT TGTCTGTAAT TTCAAACTTG TTTATATTCC TTTTTATCCT
  AAATGCACAT TTACATGTGT TATGCTCTCG TTGCACTCTC TCATTGTAGA CCTTGAGAAA
  AGCAATGAGT AGTAACCATG GTGTGGCCTG AACTGCTATC CTGTCTGGAA ATTTCTTCTA
  Y
  CAAGCAAGCA GTCAATTTCC TTTGAATTCA GCTTCTGTCA AGTTTCCATG TCATAGGCAG
  AATACAGCCA GCTTCTTTGC CAGAATATCC CATGAATGGC TTGTAGCTGA GTACTTACTA
  GAGTGCTTCA GAAACCTCAG GAAATTGCCT TCCACTGTCT GGATTTCTCT GAGCTGTCTG
  CTTTTCCAAA CTCATATCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss37877990	NES08629688	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs27688366					SNP	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37877990	NES08629688	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:19876562 () rs orientation: forward

Symbol	Name	Function Class
Atp6v0d2	ATPase, H+ transporting, lysosomal V0 subunit D2	276 bp downstream
Gm68467	predicted gene, 68467	within coordinates
Tssr41030	transcription start site region 41030	567 bp downstream
Tssr41031	transcription start site region 41031	632 bp downstream
Tssr41032	transcription start site region 41032	649 bp downstream
Tssr41033	transcription start site region 41033	688 bp downstream
Tssr41034	transcription start site region 41034	729 bp downstream
Tssr41035	transcription start site region 41035	764 bp downstream
Tssr41036	transcription start site region 41036	791 bp downstream
Tssr41037	transcription start site region 41037	913 bp downstream
Tssr41038	transcription start site region 41038	979 bp downstream
Tssr41039	transcription start site region 41039	991 bp downstream
Tssr41040	transcription start site region 41040	1033 bp downstream
Tssr41041	transcription start site region 41041	1060 bp downstream
Tssr41042	transcription start site region 41042	1067 bp downstream
Tssr41043	transcription start site region 41043	1096 bp downstream
Tssr41044	transcription start site region 41044	1184 bp downstream
Tssr41045	transcription start site region 41045	1209 bp downstream
Tssr41046	transcription start site region 41046	1245 bp downstream
Tssr41047	transcription start site region 41047	1313 bp downstream
Tssr41048	transcription start site region 41048	1332 bp downstream
Tssr41049	transcription start site region 41049	1454 bp downstream
Tssr41050	transcription start site region 41050	1593 bp downstream
Tssr41051	transcription start site region 41051	1738 bp downstream