rs27688469 SNP Detail

Summary

• ID
  rs27688469
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:181035601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTTTAGA ATATTACAAA
  CCCACGCCTT TCTGATCCCT GGCAATGTAC AGAGTGGCCC TCAGCACTGT CTCCACCTCT
  CGAGGGGCTT GGAAGGGCTT TGCTTGCCAA GAAGTCAGGG CAGTAGATGG TGAACATAGT
  GGGCTGTAGA GCTGCCTCTA ATGCAGAGGA CTCTACTTTT TCAAAGACAG GCATCCCAAG
  K
  AAACAATATA AACTAAATAG ACCTTTTTCT CATGCAAGTC TTAACATATG GGGCATCATC
  AATATTAAAT ACAAGATCTC ACTATGAAGC CGATTCTGAG CCTGGTACAC AGGCTGGCTT
  AGAACCTATC ATTCTTCTGC CTCCTCTTTT AAAATAAGGT GACGCCCTGA AGTAGGAACA
  GCTACCCCAC GTGAAAGGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37851097	NES08694226	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27688469					SNP	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37851097	NES08694226	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181035601 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr572990	regulatory region 572990			719 bp distal
Rr572991	regulatory region 572991			1015 bp distal
Rr572992	regulatory region 572992			789 bp distal
Zbtb46	zinc finger and BTB domain containing 46			Intron
				Noncoding-Transcript-Variant