rs27688478 SNP Detail

Summary

• ID
  rs27688478
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:181034257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGGGGCC TTGAGGTACA
  GAACACTAAA GTCTGGATTT CTGGAGAGAA TCCAGGAGGC CTGGGCCTGA GGAAGTGTGC
  ATAGGAACCA GTGTACTCTG TAGAAAGTTA GCCTGTCCAG AATTTCCTCC CTAGAGATGG
  GATGTGTGGG GTACTCATAG GAGTATCAGC CTGGCCAGCT GTACCTCCTT GTATATAAGA
  Y
  CTGACCCTAA GCTTAATGGA AGCTTAAGGA ACCCAGAGGA GCCCATAACT GTCTCTGGCC
  AGGCAGCCCT AGGCCATACA CAGGTGGATT GGTCTCAGGT CAACACCCTA GAATAGGTTT
  CCTTAAACAT AAGTTTCCCC CGACTCTAGG CTCTCTTCCT TCCTGCATAA GCTGCCACCA
  GGACTGCTAG GGAACAGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37851106	NES08694510	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27688478					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37851106	NES08694510	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181034257 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr572990	regulatory region 572990			66 bp proximal
Rr572991	regulatory region 572991			308 bp proximal
Rr572992	regulatory region 572992			534 bp proximal
Zbtb46	zinc finger and BTB domain containing 46			Intron
				Noncoding-Transcript-Variant