rs27688480 SNP Detail

Summary

• ID
  rs27688480
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:181033896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATGGGAC AGGGAGCCCA
  TACATAGCTG TGGTTGGAAG CTGCAAGAGC CTTCGAGGAA GCCCAGGCTA GCTTGGTAGG
  CTGGGCAGCA TGGGAGCTAC AGGTGAGGAG TGGAGGGAGA GGGCTCAGCG TGAAGATGAT
  GGATGGGAAG CACAATGGAG CCTGACAGCA GGGCAACAGA GTTGAACCCC AGCCTGGCTG
  Y
  TATGCACGTT GCTTCCATGA AAAGGGGCAA GTCCTTCTGT CCTATGTCTC AACTGAAAGG
  CAAGGACAGA GATGACAGAG GAAATGTGGC AGCCAGGGAG GGACAGAGGC AGTCAGTGCC
  CTGCCCGTTG TAGTACTTAG CAGGAAGACA CAGTACTCAG CAGAGGGGCC TTGAGGTACA
  GAACACTAAA GTCTGGATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37851108	NES08694507	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27688480					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37851108	NES08694507	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181033896 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr572990	regulatory region 572990			427 bp proximal
Rr572991	regulatory region 572991			669 bp proximal
Rr572992	regulatory region 572992			895 bp proximal
Zbtb46	zinc finger and BTB domain containing 46			Intron
				Noncoding-Transcript-Variant