rs27688489 SNP Detail

Summary

• ID
  rs27688489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:181033124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATCATCCT TGTCATCCCC
  CAGCAGTGCA TCCTCATGGG CCAAGCCCAC GTCATCCTTC CACTTGGCCA CGTCCTCATC
  CTCATCCTCA ACCAGCTCCT CCTCAGCCTC CCCTCGTGGA TCATCCGGGT CCTCCAGGTA
  CGGCCCTTCA CCAGCAAACA GCGCCTCAGG GGAGCCCTCG CCACCTCCAC CATGGTCCAG
  Y
  GGCGTGCCCA CACCCCGGCC AGCACAGTCT GCACACACCC CATGGCGACG AGAGCCGTGC
  TTAATGCCCA CGCTGGCTGC AGACATGAAC ACACGGCTGC ACACTTTGCA CACGTACTTC
  TTGTCCTTGC TGTGGACCTG GAGGAACAGA GCAGTCAGTG GAGATGTGAA GTATTGGGGT
  GAGGAGTACA GTCATGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37851117	NES08694489	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27688489					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37851117	NES08694489	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181033124 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr572990	regulatory region 572990			1199 bp proximal
Rr572991	regulatory region 572991			1441 bp proximal
Rr572992	regulatory region 572992			1667 bp proximal
Zbtb46	zinc finger and BTB domain containing 46			Coding-Synonymous
				Intron
				Noncoding-Transcript-Variant