rs27689676 SNP Detail

Summary

• ID
  rs27689676
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:8823034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGTATGG AGGGTTTTAT
  GCGATGGGGA TACGTGGCCA TTGGTGGTTG CTCAAGTTTG TGCCTCTTAC CAAGGTCACG
  AACAGATGCT GTGCCATTGC GCAGAGGGTA GGCAGCGTCT CTTACCCCTG TCCTCTTTGC
  CCTAGGTTAT TAGTTAAAGA TAGACAGAGA TATCTAACCT TCTTTGAGGA GAGGACCAGC
  Y
  CCTGACATGG TCAGTTATGT CTCAAAGATG CTTTTACAAG CTGCTTAGCC GGCTCTCTGG
  ACTCGAGGTC ACTAACTTAT GTTCAAATAC AAGACAAGAA GATTTAAAAA CCAGCAGCTC
  TCTAACTTTG AAGGAGATTA CTTGATGGTT TCTTAGCTGT TCTCCAGAAA GTGTTAGCCA
  GGCCCAAGCA GGTTGCCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37859108	NES08652685	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27689676					SNP	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37859108	NES08652685	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8823034 () rs orientation: forward

Symbol	Name	Function Class
Chd7	chromodomain helicase DNA binding protein 7	within coordinates
Tssr1116	transcription start site region 1116	895 bp downstream
Tssr36434	transcription start site region 36434	1254 bp downstream
Tssr36435	transcription start site region 36435	1232 bp downstream
Tssr36436	transcription start site region 36436	230 bp downstream
Tssr36437	transcription start site region 36437	216 bp downstream
Tssr40890	transcription start site region 40890	400 bp upstream
Tssr40891	transcription start site region 40891	207 bp downstream