rs27689683 SNP Detail

Summary

• ID
  rs27689683
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:8821994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGAAGAAC ACAAGCTAAT
  GACAGGAATG ATGGTTGAGG GTCATGGGCT GGAGCCAGAG CTGCACCGTC ACTCTTGGTG
  GCTAGTCGTG CTGTGAATTG GGGACCTACT ACTCGCTTAT CCCCAAAGGA ATTGAGGCTT
  TAAATTTAAA TTATTTTAAC TTGATAAAAC CCTTTTATTT CTCAAAGTTA AAAGGCTCAA
  R
  ACATTTCATA ATTAAGGGTG CCCTGTAGTG CTCATTGTTT GATACTGCCA TGTAATCTGT
  TAACTTAGGA AAACAATTTG TTTTTGGGCT GTTTTCTGTT TGATTGTTTG CTTTTAAGTT
  TTTGGGTTTT TTTTTTTTTT TTAAAATGGG TAATGGATAA AGCCCGAGGC TAGGCAGATA
  GCAACTTTCA GTACTATTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37859115	NES08652678	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27689683					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37859115	NES08652678	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8821994 () rs orientation: forward

Symbol	Name	Function Class
Chd7	chromodomain helicase DNA binding protein 7	within coordinates
Tssr1116	transcription start site region 1116	141 bp upstream
Tssr36434	transcription start site region 36434	214 bp downstream
Tssr36435	transcription start site region 36435	192 bp downstream
Tssr36436	transcription start site region 36436	788 bp upstream
Tssr36437	transcription start site region 36437	815 bp upstream
Tssr40890	transcription start site region 40890	633 bp downstream
Tssr40891	transcription start site region 40891	1247 bp downstream