rs27689688 SNP Detail

Summary

• ID
  rs27689688
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:8821685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCTTGTC TTGCCTCTGC
  AGTTCAGGTG CTATGATTTT AGGCATGGAC CCATGTGCTT AGTACCAACT TTTTGATGCC
  GTCACCGGAA AGAAAAACAA GGTGATGGTA GCTATTAGGG GCAGTGATGG GTAGATGGGG
  CAACACAGTG CCAAAATATC AAATAGCACA AAGCTGCACA GCGTGGAAGG TGTTGCAAAA
  Y
  ATCCGTTGTT CTTCTAAATC TGGTGCAAGC AGAAGGGAGG ATCAGCGGAT GTTCAGGTCC
  AGGTTAAGGA AGGAAAAGAC ATCTAAAGGG AGACGTTGTT TCAAGCTCTT AGAAGAACAC
  AAGCTAATGA CAGGAATGAT GGTTGAGGGT CATGGGCTGG AGCCAGAGCT GCACCGTCAC
  TCTTGGTGGC TAGTCGTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37859120	NES08652671	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27689688					SNP	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37859120	NES08652671	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8821685 () rs orientation: forward

Symbol	Name	Function Class
Chd7	chromodomain helicase DNA binding protein 7	within coordinates
Tssr1116	transcription start site region 1116	450 bp upstream
Tssr36434	transcription start site region 36434	86 bp upstream
Tssr36435	transcription start site region 36435	98 bp upstream
Tssr36436	transcription start site region 36436	1097 bp upstream
Tssr36437	transcription start site region 36437	1124 bp upstream
Tssr40890	transcription start site region 40890	942 bp downstream
Tssr40891	transcription start site region 40891	1556 bp downstream