rs27689691 SNP Detail

Summary

• ID
  rs27689691
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:8821020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGAGCAG GGCCAGCCTA
  TGCCAGCCCA TGTGCTTGTG TCCAGCTTGG AGCCTTTCTG GTGGCTTCAT ATGTCTTTGT
  CCCCTTCTCT AGGCAAAAAT GTTAACTGCC CATGTGTTTC TTCTGTCAAT TAACCCGGAA
  GTCTGGAGTA GATTCCTTGT GTTTTCTGAT TGTGGTTATA TTGCTTATTA TGTACTAGAA
  K
  TTTGTCCAAG TTGAAAGCAC ACAGTACAGC AGTTGTTACC TTACTATTTA TGATAGTTAG
  TTGCTTGTTG ATGCATGCAC ATTTGGTCTG TTTTCTGAGT ATATGTTGGG AGTTAAATGA
  ATTGATATTT GTGTGAGGCA TTTCTGCTTA AAATACTTTT CTCTTTCACT TAACTTTAGT
  GTTTAATCCA CTGTACATTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37859123	NES08652760	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27689691					SNP	T	T	T	T	T	G	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37859123	NES08652760	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8821020 () rs orientation: forward

Symbol	Name	Function Class
Chd7	chromodomain helicase DNA binding protein 7	within coordinates
Tssr1116	transcription start site region 1116	1115 bp upstream
Tssr36434	transcription start site region 36434	751 bp upstream
Tssr36435	transcription start site region 36435	763 bp upstream
Tssr36436	transcription start site region 36436	1762 bp upstream
Tssr36437	transcription start site region 36437	1789 bp upstream
Tssr40890	transcription start site region 40890	1607 bp downstream