rs27689693 SNP Detail

Summary

• ID
  rs27689693
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:8820882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTTGTTC CTTAATGAAC
  AAGAGATGGC AGGCAGCCTT TGATTGTTTC CTTCTTCTCC TCCCTGCTTG AGCCTCCATG
  AGTTATCAGT GTCGAGGGAG AAAGTGGAGT TTCTGACGGA AAATTTCAGA TAGCAGGTGG
  CAGAGCAGGG CCAGCCTATG CCAGCCCATG TGCTTGTGTC CAGCTTGGAG CCTTTCTGGT
  R
  GCTTCATATG TCTTTGTCCC CTTCTCTAGG CAAAAATGTT AACTGCCCAT GTGTTTCTTC
  TGTCAATTAA CCCGGAAGTC TGGAGTAGAT TCCTTGTGTT TTCTGATTGT GGTTATATTG
  CTTATTATGT ACTAGAATTT TGTCCAAGTT GAAAGCACAC AGTACAGCAG TTGTTACCTT
  ACTATTTATG ATAGTTAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37859125	NES08652754	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27689693					SNP	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37859125	NES08652754	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8820882 () rs orientation: forward

Symbol	Name	Function Class
Chd7	chromodomain helicase DNA binding protein 7	within coordinates
Tssr1116	transcription start site region 1116	1253 bp upstream
Tssr36434	transcription start site region 36434	889 bp upstream
Tssr36435	transcription start site region 36435	901 bp upstream
Tssr36436	transcription start site region 36436	1900 bp upstream
Tssr36437	transcription start site region 36437	1927 bp upstream
Tssr40890	transcription start site region 40890	1745 bp downstream