rs27690099 SNP Detail

Summary

• ID
  rs27690099
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:9287811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAA AGTTATTCAG TTGTTCCTTG TTCCCTAACA CTGTGCAGTA
  GTTTAATCTG GTGAAATTTC TAGAGATAGT CGTGCTTTCA AACCTCACTG GTGATTGCCT
  ACCTGCAACA ACCTCTCCAG TGCTGGTGTA GAAAAGGTGC CAAGTTCAGA GGGTGTAAGA
  K
  GACTGACATA GTCATTGGGA GAAGAGTTTT AAGTCAGTTC TTTCTTCTGA TTGAAATCCT
  GAGCCCATCG GTTAGGTGTA CTTCTTAAAA CTACAAATAA GCTAGCTGAC TCCTTTAGCT
  ATTACAAAGG CATTCAAGAA CCTTTTACAT CTGGCAAGAG TTCTGTGTCT CATCCAATTT
  TATTTTCCTG AATGATAGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37857222	NES08660471	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	T	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27690099					SNP	T	T	T	T	G	T	T	T	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37857222	NES08660471	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9287811 () rs orientation: forward

Symbol	Name	Function Class
Clvs1	clavesin 1	within coordinates
Gm11816	predicted gene 11816	420 bp upstream
Rr588686	regulatory region 588686	262 bp distal
Tssr40896	transcription start site region 40896	461 bp upstream