rs27690100 SNP Detail

Summary

• ID
  rs27690100
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:9287717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTG TGTGTGTGTG TGTGTGTGTG
  TGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAAAGTTAT
  TCAGTTGTTC CTTGTTCCCT AACACTGTGC AGTAGTTTAA TCTGGTGAAA TTTCTAGAGA
  Y
  AGTCGTGCTT TCAAACCTCA CTGGTGATTG CCTACCTGCA ACAACCTCTC CAGTGCTGGT
  GTAGAAAAGG TGCCAAGTTC AGAGGGTGTA AGATGACTGA CATAGTCATT GGGAGAAGAG
  TTTTAAGTCA GTTCTTTCTT CTGATTGAAA TCCTGAGCCC ATCGGTTAGG TGTACTTCTT
  AAAACTACAA ATAAGCTAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37857223	NES08660470	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27690100					SNP	T	T	C	T	T	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37857223	NES08660470	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9287717 () rs orientation: forward

Symbol	Name	Function Class
Clvs1	clavesin 1	within coordinates
Gm11816	predicted gene 11816	326 bp upstream
Rr588686	regulatory region 588686	168 bp distal
Tssr40896	transcription start site region 40896	367 bp upstream