rs27690115 SNP Detail

Summary

• ID
  rs27690115
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:9286055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAAGTTAA GCTCGGGTCC
  CGTTGTTTTG CTGTTTGGAG TCCCAGTTTC TCAAGTGGAA ACTGTATAAG ACATCCGGCC
  TGTCAGGCTG CTGCTAGGAC AAACACAATC TTGGTAGAGT CCCAGAGGCA GAAGGGATTG
  AATGATGAAT TCTGAAGTCA GGTGGCCACC TTTAATTCCA GCAGCCTCCT GAAAGTCCCA
  W
  GCCTTAAGAT GTAGTTGAAA TCCTATCATG CAGTCTCTCA CCTGTAAAGT AGGAGTGGTG
  ACCTGAGGTT TACACTGGTT GATGCACAGA AGTACTTCTT TCTTAAGAAT AAATAAGCCA
  AGCAGGTAAA GAACTGGGAT ACCAGGTCAA AAGATACTTT CTAAACACTG AAACCTTTGA
  TCAAATTATC AACATTTTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37857238	NES08660705	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27690115					SNP	T	T	T	T	T	A	T	T	T	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37857238	NES08660705	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9286055 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Clvs1	clavesin 1			Intron
				Noncoding-Transcript-Variant
Gm11816	predicted gene 11816			within coordinates
Rr588685	regulatory region 588685			1651 bp distal
Rr588686	regulatory region 588686			1265 bp proximal
Tssr40896	transcription start site region 40896			1262 bp downstream