rs27690126 SNP Detail

Summary

• ID
  rs27690126
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:9285553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTATAAAA GTGACCAACT
  GGGAGCAGGT CACAGCAAAG GCATGAGAGC AATTGTCCTA CCAGAATTCC AGCTGGTCTT
  GCTCAGAGAT GGAGGCTCCA ACAGCAGAAA TCTGTGTGGT TTCCGAGTTT TCTGCAGCTG
  CCAGGCTGAG CTGAATGAGT TAAACACAAA AGAACCACAT ACTCATTCAT AAAGTAAGCA
  W
  GGCCAGCACT TCCAGAGCCA GCAGAGTTGT TATTCTAGTG TACCCGCTTC ATATGCATTG
  GGACACAAGT TGACACCCTT ACTCAGTGAT TCCTCTGATC ATAACTTATC TCACAGCAGC
  ATCAGCAAGA CTTCACAATC TGCCCCTTTA AGATCCCTAA AGAAAATCCA TTGCTTGCCT
  GTGTTTTCTG AGCTGCAAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37857249	NES08660685	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27690126					SNP	T	T	T	T	T	T	T	T	T	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37857249	NES08660685	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9285553 () rs orientation: forward

Symbol	Name	Function Class
Clvs1	clavesin 1	within coordinates
Gm11816	predicted gene 11816	within coordinates
Rr588685	regulatory region 588685	1149 bp distal
Rr588686	regulatory region 588686	1767 bp proximal
Tssr40896	transcription start site region 40896	1764 bp downstream